Search found 17 matches

by monirathhav
Mon Nov 04, 2019 10:36 pm
Forum: General
Topic: AirLab
Replies: 6
Views: 3732

Re: AirLab

Hi Sergio,

One of my new colleagues has registered herself on Airlab. Can you assign her to Merchant Lab group please?

Name: Chinthirla Bhuvaneswari
Email: Bhuvaneswari.Chinthirla@cshs.org

Thank you.

Monirath
by monirathhav
Sat Aug 24, 2019 4:45 am
Forum: Data analysis
Topic: CellProfiler error
Replies: 0
Views: 586

CellProfiler error

Hi, I got this error message when running the resize module in CP3. Does anyone have experience fixing this error? Invalid dimension for image data. My TIFF files can be downloaded from this link. https://drive.google.com/open?id=16K41rSZWj2thojl2oy4GQG2XE584AYB5 CP3 error.PNG Thanks for your help. ...
by monirathhav
Fri Jun 07, 2019 6:11 pm
Forum: General
Topic: AirLab
Replies: 6
Views: 3732

Re: AirLab

Hi Sergio,

Please add her to the group in which I'm also a member. I'm guessing "Merchant Lab"?

Thank you.

Monirath
by monirathhav
Fri Jun 07, 2019 5:26 pm
Forum: General
Topic: AirLab
Replies: 6
Views: 3732

Re: AirLab

Hi Sergio. My colleague, Joslyn, just joined our lab and wishes to be assigned to Merchant lab group. Her email is joslyn.foley@cshs.org. She just signed up on Airlab. Can you help add her to Merchant lab group, please?

Thank you.

Monirath
by monirathhav
Thu May 16, 2019 5:16 pm
Forum: General
Topic: AirLab
Replies: 6
Views: 3732

Re: AirLab

Thank you, Sergio. This issue has been resolved.

Best,

Monirath
by monirathhav
Mon May 13, 2019 6:37 pm
Forum: General
Topic: AirLab
Replies: 6
Views: 3732

AirLab

I was just wondering who is now the Administrator for AirLab. My colleague signed up for AirLab about 3 weeks ago and requested to join a specific lab but never got the access. Can somebody help who we should contact next? We actually sent an email to Raul Catena but have not got any response. Thank...
by monirathhav
Tue Dec 11, 2018 5:57 am
Forum: General
Topic: IMC staining on bone marrow trephine
Replies: 1
Views: 1397

IMC staining on bone marrow trephine

Hi,

Is anyone here working with decalcified bone marrow trephine? Our lab has had issue with getting some markers and Iridium to work on BM trephine biopsies.

I would appreciate input on this matter.

Monirath
by monirathhav
Wed Oct 31, 2018 8:39 pm
Forum: Data analysis
Topic: Bug with HistoCAT
Replies: 7
Views: 2622

Re: Bug with HistoCAT

Hi Denis,

Can you provide me with the version that can fix the seed problem?

Thank you.

Monirath
by monirathhav
Thu Oct 18, 2018 7:00 pm
Forum: Data analysis
Topic: Bug with HistoCAT
Replies: 7
Views: 2622

Re: Bug with HistoCAT

Hi Denis, Have you ever had this problem where HistoCAT generated different numbers of clusters each time you run phenograph? The expression of each marker changes to some extent as well. Take CCR4 expression as an example. We can clearly see the difference. See attached. These phenotypes and heatma...
by monirathhav
Wed Oct 17, 2018 5:09 pm
Forum: Data analysis
Topic: Bug with HistoCAT
Replies: 7
Views: 2622

Re: Bug with HistoCAT

Hi Denis,

The issue has been solved. It was due to special character in my file and folder names. I used dot instead of underscore. I changed the file names and HistoCAT is displaying the right masks now. Thank you very much.

Monirath