Data analysis

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IMC data processing-Normalization & Scaling

Last post by sbooth « Wed Jun 12, 2019 6:34 pm

by sbooth » Wed Jun 12, 2019 6:34 pm

0 Replies

637 Views

Last post by sbooth
Wed Jun 12, 2019 6:34 pm
Histocat - Differential cell neighborhood analysis

Last post by DenisSchapiro « Wed Apr 24, 2019 2:57 am
Replies: 1
by sbooth » Tue Apr 23, 2019 11:36 pm

1 Replies

4193 Views

Last post by DenisSchapiro
Wed Apr 24, 2019 2:57 am
histoCAT on Mac - tiny display fonts

Last post by DenisSchapiro « Mon Mar 11, 2019 7:58 pm
Replies: 1
by stoh » Tue Feb 05, 2019 8:35 pm

1 Replies

579 Views

Last post by DenisSchapiro
Mon Mar 11, 2019 7:58 pm
Histocat neighborhood analysis

Last post by sleungy « Wed Jan 09, 2019 1:32 am
Replies: 2
by sleungy » Mon Dec 31, 2018 5:00 am

2 Replies

715 Views

Last post by sleungy
Wed Jan 09, 2019 1:32 am
Reproducibility PhenoGraph algorithm in histoCAT

Last post by DenisSchapiro « Tue Jan 08, 2019 7:52 pm
Replies: 3
by ElisaRasca » Wed Oct 31, 2018 2:32 pm

3 Replies

1522 Views

Last post by DenisSchapiro
Tue Jan 08, 2019 7:52 pm
Shannon Entropy to quantify cell heterogeneity?

Last post by sbooth « Tue Dec 11, 2018 5:30 pm
Replies: 2
by sbooth » Tue Dec 11, 2018 5:11 pm

2 Replies

726 Views

Last post by sbooth
Tue Dec 11, 2018 5:30 pm
Please report ALL histoCAT issues in Github

Last post by DenisSchapiro « Tue Nov 20, 2018 12:17 am

by DenisSchapiro » Tue Nov 20, 2018 12:17 am

0 Replies

1016 Views

Last post by DenisSchapiro
Tue Nov 20, 2018 12:17 am
Compensation slide acquisition

Last post by sbooth « Thu Nov 15, 2018 11:03 pm
Replies: 3
by sbooth » Mon Nov 12, 2018 6:27 pm

3 Replies

1111 Views

Last post by sbooth
Thu Nov 15, 2018 11:03 pm
Rphenograph

Last post by ElisaRasca « Fri Nov 02, 2018 5:50 pm
Replies: 2
by ElisaRasca » Wed Oct 31, 2018 3:22 pm

2 Replies

883 Views

Last post by ElisaRasca
Fri Nov 02, 2018 5:50 pm
Bug with HistoCAT

Last post by monirathhav « Wed Oct 31, 2018 8:39 pm
Replies: 7
by monirathhav » Mon Oct 15, 2018 11:06 pm

7 Replies

1651 Views

Last post by monirathhav
Wed Oct 31, 2018 8:39 pm
Help with neighborhood analysis

Last post by DenisSchapiro « Tue Oct 30, 2018 8:29 pm
Replies: 8
by mattbliss90 » Fri Jul 06, 2018 6:52 pm

8 Replies

2030 Views

Last post by DenisSchapiro
Tue Oct 30, 2018 8:29 pm
histoCAT++ manual

Last post by ssivajothi « Mon Oct 29, 2018 12:50 pm
Replies: 25
by milind747 » Fri Jan 12, 2018 12:22 am
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25 Replies

7354 Views

Last post by ssivajothi
Mon Oct 29, 2018 12:50 pm
Cell population frequencies in HistoCat

Last post by DenisSchapiro « Fri Oct 19, 2018 8:58 pm
Replies: 10
by mattbliss90 » Tue Jul 24, 2018 6:12 pm
1

2
10 Replies

2874 Views

Last post by DenisSchapiro
Fri Oct 19, 2018 8:58 pm
histoCAT: Missing channels in Phenograph clusters

Last post by ElisaRasca « Tue Oct 16, 2018 7:45 am
Replies: 4
by ElisaRasca » Tue Oct 09, 2018 8:07 am

4 Replies

1254 Views

Last post by ElisaRasca
Tue Oct 16, 2018 7:45 am
Preprocessing and normalization in histoCAT

Last post by ElisaRasca « Tue Oct 09, 2018 7:56 am
Replies: 4
by erikg » Wed Mar 14, 2018 3:48 pm

4 Replies

1590 Views

Last post by ElisaRasca
Tue Oct 09, 2018 7:56 am
Checking uncertainty in Ilastik

Last post by votti « Mon Oct 08, 2018 4:26 pm
Replies: 1
by monirathhav » Thu Oct 04, 2018 3:57 am

1 Replies

718 Views

Last post by votti
Mon Oct 08, 2018 4:26 pm
[HistoCAT] Import different masks for same image

Last post by DenisSchapiro « Tue Sep 25, 2018 2:20 pm
Replies: 1
by Judith » Fri Sep 21, 2018 6:38 pm

1 Replies

745 Views

Last post by DenisSchapiro
Tue Sep 25, 2018 2:20 pm
HistoCAT 1.75 Gating problem

Last post by DenisSchapiro « Tue Sep 25, 2018 2:11 pm
Replies: 3
by MicheleBorto » Fri Sep 07, 2018 10:33 am

3 Replies

1249 Views

Last post by DenisSchapiro
Tue Sep 25, 2018 2:11 pm
Histocat++ for windows?

Last post by RaulCatena « Wed Aug 08, 2018 2:55 pm
Replies: 1
by sbooth » Tue Jul 17, 2018 10:40 pm

1 Replies

862 Views

Last post by RaulCatena
Wed Aug 08, 2018 2:55 pm
Data Plots

Last post by RaulCatena « Wed Aug 08, 2018 2:51 pm
Replies: 3
by Scott » Wed Aug 01, 2018 1:03 pm

3 Replies

1066 Views

Last post by RaulCatena
Wed Aug 08, 2018 2:51 pm
ome2singletiff error on windows, histocat conversion errors

Last post by votti « Tue Aug 07, 2018 8:59 am
Replies: 1
by arcolombo698 » Wed Aug 01, 2018 8:56 pm

1 Replies

704 Views

Last post by votti
Tue Aug 07, 2018 8:59 am
Neighborhood Analysis Cropping

Last post by pbull « Wed Aug 01, 2018 2:52 pm
Replies: 2
by pbull » Mon Jul 30, 2018 9:31 pm

2 Replies

944 Views

Last post by pbull
Wed Aug 01, 2018 2:52 pm
Cell Segmentation Subtraction

Last post by DenisSchapiro « Tue Jul 24, 2018 7:55 pm
Replies: 1
by pbull » Mon Jul 23, 2018 10:08 pm

1 Replies

765 Views

Last post by DenisSchapiro
Tue Jul 24, 2018 7:55 pm
Imctools

Last post by votti « Fri Jul 20, 2018 11:03 am
Replies: 15
by votti » Fri Jan 12, 2018 4:50 pm
1

2
15 Replies

5006 Views

Last post by votti
Fri Jul 20, 2018 11:03 am
IMC segmentation pipeline

Last post by votti « Wed Apr 11, 2018 6:14 pm

by votti » Wed Apr 11, 2018 6:14 pm

0 Replies

4490 Views

Last post by votti
Wed Apr 11, 2018 6:14 pm

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