Search found 16 matches

by monirathhav
Sat Aug 24, 2019 4:45 am
Forum: Data analysis
Topic: CellProfiler error
Replies: 0
Views: 21

CellProfiler error

Hi, I got this error message when running the resize module in CP3. Does anyone have experience fixing this error? Invalid dimension for image data. My TIFF files can be downloaded from this link. https://drive.google.com/open?id=16K41rSZWj2thojl2oy4GQG2XE584AYB5 CP3 error.PNG Thanks for your help. ...
by monirathhav
Fri Jun 07, 2019 6:11 pm
Forum: General
Topic: AirLab
Replies: 5
Views: 2633

Re: AirLab

Hi Sergio,

Please add her to the group in which I'm also a member. I'm guessing "Merchant Lab"?

Thank you.

Monirath
by monirathhav
Fri Jun 07, 2019 5:26 pm
Forum: General
Topic: AirLab
Replies: 5
Views: 2633

Re: AirLab

Hi Sergio. My colleague, Joslyn, just joined our lab and wishes to be assigned to Merchant lab group. Her email is joslyn.foley@cshs.org. She just signed up on Airlab. Can you help add her to Merchant lab group, please?

Thank you.

Monirath
by monirathhav
Thu May 16, 2019 5:16 pm
Forum: General
Topic: AirLab
Replies: 5
Views: 2633

Re: AirLab

Thank you, Sergio. This issue has been resolved.

Best,

Monirath
by monirathhav
Mon May 13, 2019 6:37 pm
Forum: General
Topic: AirLab
Replies: 5
Views: 2633

AirLab

I was just wondering who is now the Administrator for AirLab. My colleague signed up for AirLab about 3 weeks ago and requested to join a specific lab but never got the access. Can somebody help who we should contact next? We actually sent an email to Raul Catena but have not got any response. Thank...
by monirathhav
Tue Dec 11, 2018 5:57 am
Forum: General
Topic: IMC staining on bone marrow trephine
Replies: 1
Views: 984

IMC staining on bone marrow trephine

Hi,

Is anyone here working with decalcified bone marrow trephine? Our lab has had issue with getting some markers and Iridium to work on BM trephine biopsies.

I would appreciate input on this matter.

Monirath
by monirathhav
Wed Oct 31, 2018 8:39 pm
Forum: Data analysis
Topic: Bug with HistoCAT
Replies: 7
Views: 1898

Re: Bug with HistoCAT

Hi Denis,

Can you provide me with the version that can fix the seed problem?

Thank you.

Monirath
by monirathhav
Thu Oct 18, 2018 7:00 pm
Forum: Data analysis
Topic: Bug with HistoCAT
Replies: 7
Views: 1898

Re: Bug with HistoCAT

Hi Denis, Have you ever had this problem where HistoCAT generated different numbers of clusters each time you run phenograph? The expression of each marker changes to some extent as well. Take CCR4 expression as an example. We can clearly see the difference. See attached. These phenotypes and heatma...
by monirathhav
Wed Oct 17, 2018 5:09 pm
Forum: Data analysis
Topic: Bug with HistoCAT
Replies: 7
Views: 1898

Re: Bug with HistoCAT

Hi Denis,

The issue has been solved. It was due to special character in my file and folder names. I used dot instead of underscore. I changed the file names and HistoCAT is displaying the right masks now. Thank you very much.

Monirath
by monirathhav
Tue Oct 16, 2018 3:42 pm
Forum: Data analysis
Topic: Bug with HistoCAT
Replies: 7
Views: 1898

Re: Bug with HistoCAT

Hi Denis, I have attached 3 examples for you where the same mask from case 8_3939 was applied to all other cases. At first, I thought that I mistakenly copied and pasted the wrong mask file into the other two TIFF folders. But I already checked in the original TIFF folders and saw that I had the rig...