Search found 5 matches

by Seb
Thu Aug 08, 2019 9:04 pm
Forum: Data analysis
Topic: Export cell coordinates in histocat++
Replies: 2
Views: 861

Re: Export cell coordinates in histocat++

as reply to my question after making a mask select from the top left menu "cell data" select "data table" from the menu on the right then select all data from the different masks select the markers you want to export at the bottom of the data table view there is a button "Export as TSV" pick name an...
by Seb
Wed Aug 07, 2019 4:40 pm
Forum: Data analysis
Topic: Export cell coordinates in histocat++
Replies: 2
Views: 861

Re: Export cell coordinates in histocat++

thank you for the quick reply.

I can get through all steps but the export, I can't find any functions/buttons/right-click menus etc to export the table.

tnx
by Seb
Wed Aug 07, 2019 4:02 pm
Forum: Data analysis
Topic: Export cell coordinates in histocat++
Replies: 2
Views: 861

Export cell coordinates in histocat++

hi all I'm working with a few watershed masks generated from mcd files and I'd like to extract the coordinates of the cells highlighted in the mask. so far here's what I do: - right click on the mask - extract features from mask - select total cells - select the resulting mask from the explorer on t...
by Seb
Fri Aug 02, 2019 7:52 pm
Forum: Data analysis
Topic: Merge ROIs from IMC
Replies: 2
Views: 729

Re: Merge ROIs from IMC

thank you for the reply.
so, i have the coordinate csv files for most of my mcd files, made by a person in our core, but now I'd like to put them together to analyze spatial relationship using the whole image.
I'm happy to give it a shot but I'm not sure where to start...
thanks
by Seb
Thu Aug 01, 2019 6:53 pm
Forum: Data analysis
Topic: Merge ROIs from IMC
Replies: 2
Views: 729

Merge ROIs from IMC

hi all

I'm looking for a way to merge various ROIs to rebuild the original image.
I have mcd files, tiffs and txt files per each ROI, I can't seem to find a way to do that tho

any suggestions would be great, thanks