MCD file parser library

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Computational image analysis of multiplexed Imaging Mass Cytometry acquisitions
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jonas
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Joined: Mon Nov 27, 2017 12:22 pm

MCD file parser library

Post by jonas » Fri Jan 12, 2018 2:26 pm

Hi all,

We decided to make our in-house C++/Python library for reading MCD file contents available to the IMC community: https://github.com/BodenmillerGroup/mcdlib

The library currently supports full metadata access, slide/panorama image extraction, in-memory acquisition data access and export to the OME-TIFF file format. It is intended to be used by computational researchers/developers to support IMC data analysis workflows and tool development. Currently, we do not provide binaries of the library, but the setup is streamlined using CMake. Please report issues via GitHub, any feedback is highly appreciated.

Jonas
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